Basic Information
Locus ID:
Pt_Chr0104427
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 150452650 | 150459808 | + | Pt_Chr0104427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 77,995.06 Da | 50.60 | 83.09 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 33 | 84 | 2.75E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 78 | 1.2E-5 | - |
| SMART | SM00256 | fbox_2 | 37 | 78 | 0.0035 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 31 | 81 | 8.676143 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048559842.1 | uncharacterized protein LOC125540285 isoform X1 [Triticum urartu] | 0 |
| TrEMBL | A0A3B6B8N1 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104427 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G942200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG077080 |
| Poaceae | Triticum aestivum | 15 | TraesCS1A02G380500.1, TraesCS1B02G402500.1 ... |