Basic Information
Locus ID:
Pt_Chr0104248
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 143363675 | 143375362 | - | Pt_Chr0104248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 154,878.34 Da | 50.82 | 74.88 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 786 | 899 | 1.9E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 1054 | 1168 | 4.5E-13 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 1306 | 1385 | 6.6E-15 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 939 | 1386 | 6.18E-69 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 888 | 1064 | 2.4E-59 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1298 | 1405 | 1.5E-17 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1221 | 1297 | 6.9E-17 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 719 | 887 | 4.5E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1065 | 1220 | 8.9E-55 | - |
| SMART | SM00439 | BAH_4 | 785 | 902 | 1.1E-21 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 939 | 1393 | 42.935013 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 785 | 902 | 18.937166 | IPR001025 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1368 | 1386 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 1072 | 1084 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1115 | 1129 | 5.0E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 940 | 956 | 5.0E-5 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 312 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_051181902.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X13 [Lolium perenne] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6HTM7 | DNA (cytosine-5-)-methyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology