Basic Information
Locus ID:
Pt_Chr0104226
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 142685892 | 142689380 | - | Pt_Chr0104226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 34,008.86 Da | 51.24 | 69.08 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 244 | 284 | 5.48013E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 243 | 289 | 1.3E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 235 | 290 | 8.84E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 294 | 9.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 245 | 283 | 0.0038 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 245 | 284 | 11.530333 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051179957.1 | probable E3 ubiquitin-protein ligase LOG2 [Lolium perenne] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | I1HFE0 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100842127 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology