Basic Information
Locus ID:
Pt_Chr0104126
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 139567804 | 139568865 | + | Pt_Chr0104126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 36,545.10 Da | 34.59 | 85.35 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 139 | 249 | 2.53844E-46 | - |
| CDD | cd00121 | MATH | 16 | 133 | 8.47452E-26 | IPR002083 |
| Pfam | PF00917 | MATH domain | 22 | 134 | 1.2E-9 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 140 | 251 | 8.0E-23 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 15 | 129 | 1.64E-29 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 136 | 250 | 4.51E-28 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 16 | 136 | 2.7E-28 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 252 | 323 | 3.1E-15 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 137 | 251 | 1.1E-28 | IPR011333 |
| SMART | SM00225 | BTB_4 | 142 | 252 | 2.9E-27 | IPR000210 |
| SMART | SM00061 | math_3 | 20 | 125 | 1.5E-8 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 15 | 148 | 22.922323 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 142 | 205 | 18.017067 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047054241.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7R9Y6 | Speckle-type POZ protein-like protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0110870, gene-QOZ80_2BG0164290 ... |
| Poaceae | Hordeum vulgare | 13 | HORVU.MOREX.r3.5HG0427590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_009241, gene-QYE76_009243, gene-QYE76_016733 ... |
| Poaceae | Oryza coarctata | 1 | Oco04G008990 |
| Poaceae | Oryza sativa | 6 | LOC_Os02g20590.1, LOC_Os02g20600.1, LOC_Os02g20620.1 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0103080, Pt_Chr0103081, Pt_Chr0104126, Pt_Chr0104129 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G001120, Chr09G001130 |
| Poaceae | Thinopyrum elongatum | 16 | Tel1E01G144500, Tel1E01G145100, Tel1E01G145300 ... |
| Poaceae | Triticum dicoccoides | 21 | gene_TRIDC1AG009740, gene_TRIDC1AG009770 ... |
| Poaceae | Triticum aestivum | 51 | TraesCS1A02G070700.1.cds1, TraesCS1A02G070800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34043 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21999 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1995_chr01_- |