Basic Information
Locus ID:
Pt_Chr0104117
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 139387534 | 139389542 | + | Pt_Chr0104117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 48,283.46 Da | 51.73 | 96.05 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 60 | 2.3E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 152 | 356 | 9.02E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 77 | 3.66E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 137 | 412 | 3.1E-10 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 70 | 1.1E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 57 | 9.073559 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16930.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_037485717.1 | MEIOTIC F-BOX protein MOF-like isoform X1 [Triticum dicoccoides] | 0 |
| Q7X7A4 | MEIOTIC F-BOX protein MOF OS=Oryza sativa subsp. japonica OX=39947 GN=MOF PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6C7Q2 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology