halophFGD

Basic Information

Locus ID: Pt_Chr0103633

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	121485248	121485737	-	Pt_Chr0103633

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
11.05	12,714.52 Da	64.90	87.05	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12937	F-box-like	34	74	4.8E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	30	74	6.67E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	33	76	1.5E-10	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_044955211.1	uncharacterized protein LOC123405671 [Hordeum vulgare subsp. vulgare]	0
TrEMBL	A0A8I6YF60	DUF295 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	10	AH08.53, BH01.1445, BH01.1446, BH03.3228, BH03.3764 ... BH07.477, BH09.2588, CH03.3427, CH08.194, CH08.204
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0365330, gene-QOZ80_5AG0365340 ... gene-QOZ80_8BG0642080, gene-QOZ80_8BG0642090
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0079390.1.CDS1 ... HORVU.MOREX.r3.2HG0108310.1.CDS1, HORVU.MOREX.r3.2HG0109440.1, HORVU.MOREX.r3.3HG0322680.1.CDS1, HORVU.MOREX.r3.4HG0416780.1.CDS1, HORVU.MOREX.r3.4HG0416820.1.CDS1, HORVU.MOREX.r3.6HG0613500.1.CDS1, HORVU.MOREX.r3.6HG0613520.1.CDS1, HORVU.MOREX.r3.6HG0623980.1.CDS1, HORVU.MOREX.r3.6HG0624050.1.CDS1
Poaceae	Lolium multiflorum	29	gene-QYE76_000935, gene-QYE76_006121, gene-QYE76_016699 ... gene-QYE76_024777, gene-QYE76_025973, gene-QYE76_025974, gene-QYE76_029767, gene-QYE76_029770, gene-QYE76_033224, gene-QYE76_033228, gene-QYE76_033232, gene-QYE76_033303, gene-QYE76_038548, gene-QYE76_048472, gene-QYE76_048473, gene-QYE76_048476, gene-QYE76_048503, gene-QYE76_048511, gene-QYE76_058660, gene-QYE76_058661, gene-QYE76_060413, gene-QYE76_061357, gene-QYE76_062292, gene-QYE76_062303, gene-QYE76_071496, gene-QYE76_071503, gene-QYE76_071519, gene-QYE76_071522, gene-QYE76_071525
Poaceae	Oryza coarctata	1	Oco13G007960
Poaceae	Oryza sativa	3	LOC_Os07g31560.1, LOC_Os07g31680.1, LOC_Os07g31710.1
Poaceae	Paspalum vaginatum	4	gene-BS78_07G006600, gene-BS78_07G006800, gene-BS78_K327000 ... gene-BS78_07G009100
Poaceae	Puccinellia tenuiflora	19	Pt_Chr0100823, Pt_Chr0101034, Pt_Chr0103633, Pt_Chr0106038 ... Pt_Chr0106660, Pt_Chr0106677, Pt_Chr0106678, Pt_Chr0203382, Pt_Chr0207613, Pt_Chr0305978, Pt_Chr0306469, Pt_Chr0306512, Pt_Chr0401626, Pt_Chr0505095, Pt_Chr0600840, Pt_Chr0600841, Pt_Chr0600848, Pt_Chr0601231, Pt_Chr0702758
Poaceae	Thinopyrum elongatum	13	Tel1E01G598100, Tel1E01G598400, Tel1E01G598500 ... Tel1E01G598600, Tel2E01G257200, Tel3E01G812800, Tel4E01G625500, Tel4E01G625800, Tel4E01G650100, Tel5E01G085400, Tel5E01G096700, Tel5E01G380300, Tel6E01G634100
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG015010, gene_TRIDC5AG006330
Poaceae	Triticum aestivum	49	TraesCS1A02G367400.1.cds1, TraesCS1A02G442900.1.cds1 ... TraesCS1B02G386100.1.cds1, TraesCS1B02G476900.1.cds1, TraesCS1B02G477000.1.cds1, TraesCS1D02G373200.1, TraesCS1D02G373300.1.cds1, TraesCS1D02G373500.1.cds1, TraesCS2A02G088100.1, TraesCS2A02G345000.1.cds1, TraesCS2A02G345100.1.cds1, TraesCS2A02G345200.1.cds1, TraesCS2B02G363500.1, TraesCS2D02G038600.1.cds1, TraesCS2D02G124400.1, TraesCS2D02G343400.1, TraesCS2D02G343500.1, TraesCS3A02G495600.1.cds1, TraesCS3B02G557700.1, TraesCS3B02G559700.1.cds1, TraesCS3B02G565400.1.cds1, TraesCS4B02G399100.1.cds1, TraesCS5A02G035600.1.cds1, TraesCS5A02G235100.1.cds1, TraesCS5A02G551100.1, TraesCS5B02G035400.1.cds1, TraesCS5B02G042700.1, TraesCS5B02G044200.1.cds1, TraesCS5B02G340600.1.cds1, TraesCS5D02G048700.1, TraesCS5D02G049300.1, TraesCS5D02G242100.1.cds1, TraesCS6A02G357600.1, TraesCS6B02G132000.1.cds1, TraesCS6B02G328800.1.cds1, TraesCS6B02G389600.1, TraesCS6B02G389900.1.cds1, TraesCS6D02G279100.1.cds1, TraesCS6D02G339900.1.cds1, TraesCS6D02G340000.1.cds1, TraesCS6D02G340100.1.cds1, TraesCS7A02G192800.1.cds1, TraesCS7A02G402700.1.cds1, TraesCS7D02G396400.1.cds1, TraesCSU02G054800.1.cds1, TraesCSU02G055700.1.cds1, TraesCSU02G115800.1.cds1, TraesCSU02G145000.1.cds1, TraesCSU02G268600.1.cds1
Poaceae	Zea mays	2	Zm00001eb259990_P001, Zm00001eb260250_P001