Basic Information
Locus ID:
Pt_Chr0103556
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 119036412 | 119048075 | - | Pt_Chr0103556 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 79,053.36 Da | 41.70 | 87.22 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 1.04242E-69 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 4.78334E-129 | - |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 1.8E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 260 | 6.7E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 407 | 1.4E-14 | IPR001650 |
| Pfam | PF09382 | RQC domain | 483 | 588 | 6.2E-5 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 424 | 6.25E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 602 | 674 | 2.3E-10 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 280 | 3.1E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 3.6E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 586 | 8.8E-25 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 2.5E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 1.8E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 505 | 1.1E-158 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.914124 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 601 | 680 | 10.817641 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 450 | 19.118313 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 704 | - | - |
| Coils | Coil | Coil | 597 | 617 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_044980828.1 | ATP-dependent DNA helicase Q-like 2 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XYP4 | ATP-dependent DNA helicase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology