Basic Information
Locus ID:
Pt_Chr0103366
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 109924367 | 109929376 | + | Pt_Chr0103366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 67,469.84 Da | 40.99 | 106.29 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 464 | 487 | 0.018 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 180 | 201 | 0.043 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 490 | 512 | 0.069 | IPR001611 |
| Pfam | PF12937 | F-box-like | 11 | 43 | 5.5E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 43 | 1.1E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 140 | 375 | 6.67E-37 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 355 | 603 | 9.42E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 374 | 2.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 375 | 621 | 1.0E-54 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 136 | 191 | 1.8E-11 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 48 | 3.2E-8 | - |
| SMART | SM00367 | LRR_CC_2 | 334 | 359 | 4.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 307 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 386 | 411 | 0.46 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 232 | 257 | 87.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 258 | 282 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 360 | 385 | 62.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 438 | 463 | 0.56 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 154 | 179 | 0.0024 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 541 | 566 | 1.8E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 1.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 180 | 204 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 567 | 592 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 412 | 437 | 0.0017 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 308 | 333 | 0.015 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 514 | 0.02 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 515 | 540 | 62.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 205 | 230 | 7.9 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_051181290.1 | F-box/LRR-repeat protein 4 [Lolium perenne] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453HX04 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |