Basic Information
Locus ID:
Pt_Chr0103294
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 106441901 | 106452668 | + | Pt_Chr0103294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 90,347.95 Da | 57.10 | 77.13 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 276 | 350 | 4.79989E-33 | - |
| CDD | cd06530 | S26_SPase_I | 503 | 609 | 2.82651E-21 | IPR019533 |
| CDD | cd12352 | RRM1_TIA1_like | 72 | 142 | 4.62085E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 156 | 230 | 1.53434E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 278 | 344 | 8.8E-14 | IPR000504 |
| Pfam | PF10502 | Signal peptidase, peptidase S26 | 572 | 614 | 1.3E-6 | IPR019533 |
| Pfam | PF10502 | Signal peptidase, peptidase S26 | 499 | 561 | 3.3E-8 | IPR019533 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 157 | 227 | 5.0E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 72 | 138 | 2.0E-13 | IPR000504 |
| SUPERFAMILY | SSF51306 | LexA/Signal peptidase | 502 | 615 | 3.14E-30 | IPR036286 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 69 | 234 | 4.62E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 262 | 354 | 4.21E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 152 | 250 | 2.1E-27 | IPR012677 |
| Gene3D | G3DSA:2.10.109.10 | Umud Fragment, subunit A | 491 | 621 | 1.0E-22 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 151 | 1.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 354 | 4.3E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 277 | 346 | 2.0E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 156 | 229 | 6.4E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 156 | 229 | 0.038 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 71 | 140 | 4.3E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 277 | 346 | 2.2 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 70 | 144 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 155 | 233 | 18.171562 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 350 | 17.080015 | IPR000504 |
| PRINTS | PR00727 | Bacterial leader peptidase 1 (S26A) family signature | 547 | 559 | 1.4E-7 | IPR000223 |
| PRINTS | PR00727 | Bacterial leader peptidase 1 (S26A) family signature | 576 | 595 | 1.4E-7 | IPR000223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 830 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_003577343.1 | oligouridylate-binding protein 1 [Brachypodium distachyon] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | I1IK96 | Oligouridylate-binding protein 1-like OS=Brachypodium distachyon OX=15368 GN=100830774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology