Basic Information
Locus ID:
Pt_Chr0103145
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 101393242 | 101408740 | - | Pt_Chr0103145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 134,909.89 Da | 44.15 | 77.76 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 125 | 241 | 2.25716E-34 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 266 | 620 | 5.33745E-162 | - |
| Pfam | PF00917 | MATH domain | 130 | 250 | 2.3E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 268 | 615 | 1.1E-44 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 799 | 932 | 3.2E-38 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 942 | 1136 | 2.4E-45 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 121 | 256 | 1.41E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 263 | 645 | 2.94E-93 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 858 | 955 | 1.0E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 265 | 619 | 6.2E-85 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 799 | 857 | 6.5E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 121 | 264 | 2.8E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 125 | 229 | 3.4E-18 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 123 | 248 | 38.059464 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 268 | 618 | 38.6012 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 534 | 551 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 269 | 284 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 634 | 654 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_051181041.1 | ubiquitin C-terminal hydrolase 12-like [Lolium perenne] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8R7U7E2 | ubiquitinyl hydrolase 1 OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology