Basic Information
Locus ID:
Pt_Chr0103105
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 98955598 | 98972202 | + | Pt_Chr0103105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 115,195.04 Da | 35.95 | 84.38 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 318 | 2.04957E-178 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 474 | 566 | 8.7E-22 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 321 | 4.9E-84 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 721 | 934 | 1.4E-42 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 577 | 991 | 5.18E-107 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 427 | 472 | 1.04E-6 | IPR011330 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 319 | 4.0E-94 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 474 | 574 | 1.37E-28 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 322 | 2.0E-117 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 595 | 718 | 2.2E-28 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 719 | 982 | 9.0E-92 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 517 | 573 | 1.5E-22 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 435 | 516 | 5.0E-30 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 474 | 548 | 6.7E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_051182916.1 | alpha-mannosidase At3g26720-like [Lolium perenne] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2CNF5 | Alpha-mannosidase OS=Brachypodium distachyon OX=15368 GN=100832076 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology