Basic Information
Locus ID:
Pt_Chr0102777
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 78617124 | 78619706 | + | Pt_Chr0102777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 42,309.61 Da | 70.99 | 67.20 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 209 | 250 | 3.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 256 | 1.5E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 273 | 3.6E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 209 | 249 | 0.0045 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 209 | 250 | 11.235273 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 227 | 236 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 162 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05670.1 | RING/U-box protein. | 0 |
| RefSeq | XP_051203730.1 | uncharacterized protein LOC127317246 [Lolium perenne] | 0 |
| TrEMBL | A0A453RBI8 | PHD and RING finger domain-containing protein 1 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27375 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001318 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30945, Sbi_jg58329 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25932 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004797, GOSA_00004798 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl12850 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006821, gene:ENSEOMG00000021717 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018930, CQ.Regalona.r1.5BG0020340 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30145520, pistato.v30146700 |
| Apiaceae | Apium graveolens | 1 | Ag3G00766 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706589 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2240.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17658 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2339 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2476 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.490 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036220 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1161, BH06.1209, CH06.1326 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0517320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0671880.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G007360, Oco12G007420 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g17280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G119000 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0102777, Pt_Chr0404252, Pt_Chr0404425, Pt_Chr0502350 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G017870, Chr14G005570, Chr21G005120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G386000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG026820, gene_TRIDC7BG017370 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G212900.1, TraesCS7B02G119600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380630_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45577 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31749 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.98, evm.TU.LG09.1332 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.208, evm.TU.Scaffold_11_RagTag.209 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14236 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10055 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14372 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.255 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009987, Maker00010107 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-338, nbisL1-mrna-339 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19024, nbisL1-mrna-19025 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600198 |
| Solanaceae | Solanum chilense | 1 | SOLCI003178700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021212 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15354_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1267 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22100.v3.1 |