Basic Information
Locus ID:
Pt_Chr0102745
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 76802984 | 76814849 | - | Pt_Chr0102745 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 96,395.16 Da | 52.06 | 73.47 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 195 | 334 | 1.31767E-30 | - |
| CDD | cd00821 | PH | 35 | 134 | 6.39263E-12 | - |
| Pfam | PF00169 | PH domain | 34 | 138 | 6.2E-13 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 624 | 704 | 5.5E-22 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 195 | 339 | 7.5E-30 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 28 | 145 | 1.95E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 195 | 388 | 3.92E-33 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 165 | 388 | 1.3E-40 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 22 | 140 | 7.0E-18 | IPR011993 |
| SMART | SM00233 | PH_update | 33 | 141 | 1.7E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 192 | 383 | 1.1E-24 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 32 | 139 | 16.116301 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 186 | 386 | 29.463684 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 518 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 414 | - | - |
| Coils | Coil | Coil | 673 | 707 | - | - |
| Coils | Coil | Coil | 589 | 609 | - | - |
| Coils | Coil | Coil | 614 | 648 | - | - |
| Coils | Coil | Coil | 829 | 849 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_051214401.1 | rho GTPase-activating protein 6-like isoform X1 [Lolium perenne] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | I1H5B8 | Rho GTPase-activating protein 7 OS=Brachypodium distachyon OX=15368 GN=100835450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology