Basic Information
Locus ID:
Pt_Chr0102719
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 75728646 | 75731168 | - | Pt_Chr0102719 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 30,217.66 Da | 50.46 | 52.82 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 19 | 93 | 3.8E-20 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 146 | 190 | 1.3E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 253 | 1.2E-12 | IPR039512 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 83 | 1.96E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 141 | 8.37E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 195 | 3.06E-12 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 220 | 259 | 3.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 211 | 6.4E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 190 | 4.7E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 12 | 81 | 25.786016 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 33.399967 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 191 | 11.707369 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_047071856.1 | E3 ubiquitin-protein ligase SRFP1-like [Lolium rigidum] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IKL6 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology