Basic Information
Locus ID:
Pt_Chr0102476
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 66101376 | 66105786 | + | Pt_Chr0102476 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 58,415.15 Da | 66.04 | 74.85 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 19 | 166 | 4.20895E-51 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 279 | 1.2237E-23 | - |
| Pfam | PF13639 | Ring finger domain | 236 | 279 | 1.0E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 64 | 144 | 1.6E-8 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 290 | 7.07E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 154 | 1.96E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 197 | 283 | 4.4E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 25 | 159 | 8.9E-26 | - |
| SMART | SM00184 | ring_2 | 237 | 278 | 2.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 473 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_044459956.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X2 [Triticum aestivum] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B8G8 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology