Basic Information
Locus ID:
Pt_Chr0102400
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 63893484 | 63896761 | + | Pt_Chr0102400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 36,229.79 Da | 52.34 | 92.16 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01466 | Skp1 family, dimerisation domain | 282 | 324 | 7.6E-15 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 236 | 272 | 5.9E-9 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 280 | 324 | 1.83E-9 | IPR036296 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 227 | 271 | 9.68E-8 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 277 | 326 | 1.3E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 221 | 276 | 9.4E-11 | IPR011333 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_007024458.2 | PREDICTED: SKP1-like protein 1A [Theobroma cacao] | 0 |
| TrEMBL | A0A061GB15 | SKP1-like protein OS=Theobroma cacao OX=3641 GN=TCM_029015 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102400, Pt_Chr0701131 |