Basic Information
Locus ID:
Pt_Chr0102325
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 61493814 | 61499964 | + | Pt_Chr0102325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 76,434.37 Da | 42.73 | 100.39 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 290 | 332 | 4.56511E-27 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 494 | 532 | 2.1E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 286 | 356 | 2.9E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 412 | 450 | 4.7E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 361 | 3.53E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 385 | 686 | 4.22E-48 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 44 | 156 | 4.2E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 559 | 680 | 6.6E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 284 | 359 | 8.2E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 366 | 558 | 2.4E-35 | IPR011989 |
| SMART | SM00185 | arm_5 | 411 | 451 | 2.4E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 452 | 492 | 6.6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 289 | 352 | 1.4E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 493 | 533 | 0.008 | IPR000225 |
| SMART | SM00185 | arm_5 | 619 | 659 | 190.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 370 | 409 | 250.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 534 | 574 | 6.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 575 | 615 | 130.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 422 | 464 | 11.5324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 285 | 359 | 44.699089 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 545 | 587 | 9.6774 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_047090160.1 | protein spotted leaf 11-like [Lolium rigidum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | I1H6Y5 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100831702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology