Basic Information
Locus ID:
Pt_Chr0102308
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 60995329 | 60998296 | + | Pt_Chr0102308 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.90 | 33,523.65 Da | 75.49 | 90.43 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 241 | 280 | 1.25474E-18 | - |
| Pfam | PF13639 | Ring finger domain | 241 | 280 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 241 | 284 | 6.56E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 222 | 288 | 7.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 239 | 279 | 5.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 280 | 10.364846 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 236 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55530.1 | RING/U-box superfamily protein. Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. | 0 |
| RefSeq | XP_047090137.1 | E3 ubiquitin-protein ligase SDIR1-like isoform X1 [Lolium rigidum] | 0 |
| Q9M2S6 | E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IE68 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9948 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23778, gene_6978 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035143 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g025160, BVRB_7g173500 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg1712, Sbi_jg1715, Sbi_jg21275, Sbi_jg22584 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16467, Seu_jg3032 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00003233, GOSA_00016329 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62559, Sgl67106, Sgl73066, Sgl76452 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005036, gene:ENSEOMG00000019630 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0018590, CQ.Regalona.r1.2AG0020360 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30063020, pistato.v30175730 |
| Apiaceae | Apium graveolens | 1 | Ag2G00857 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G015730 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715660, gene-LOC103716742, gene-LOC120110138 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2336.V1.1, AsparagusV1_05.318.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08887 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010626m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06950.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070090.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1137, Ceq08G2110, Ceq08G2114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2212 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0652s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g00190 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1755, evm.TU.LG09.1236 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040050 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4189, CH02.1543 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242750, gene-QOZ80_3BG0285440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0388580.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069045 |
| Poaceae | Oryza coarctata | 2 | Oco05G009440, Oco06G009790 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g16570.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G402800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102280, Pt_Chr0102308, Pt_Chr0102310 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G030880, Chr12G008740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G366800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG013080, gene_TRIDC4BG037290 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G096000.1, TraesCS4B02G208600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb012200_P001, Zm00001eb397760_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3762 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3933 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2063, evm.TU.LG23.299 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01150 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.383, evm.TU.Scaffold_12_RagTag.227 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24576, nbisL1-mrna-25990 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14755, nbisL1-mrna-7062 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4546 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000005l.124, evm.TU.utg000008l.975 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000427, Maker00010192, Maker00017893 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2078, nbisL1-mrna-5555 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11735, nbisL1-mrna-9439 |
| Salicaceae | Populus euphratica | 2 | populus_peu20306, populus_peu35701 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605852, gene-LOC132640342 |
| Solanaceae | Solanum chilense | 2 | SOLCI002716500, SOLCI007047700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018644, gene-LOC107021742 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13226_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0808 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24990.v3.1 |