Basic Information
Locus ID:
Pt_Chr0102237
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 58058406 | 58063291 | + | Pt_Chr0102237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 42,812.68 Da | 41.05 | 75.80 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 315 | 363 | 2.5E-12 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 312 | 370 | 1.16E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 254 | 1.13E-20 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 297 | 377 | 3.4E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 39 | 278 | 2.0E-13 | IPR027267 |
| SMART | SM00326 | SH3_2 | 311 | 366 | 1.1E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 308 | 367 | 20.037888 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 304 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 189 | 223 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_047090069.1 | SH3 domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IUZ6 | SH3 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology