halophFGD

Basic Information

Locus ID: Pt_Chr0102173

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	55936258	55939447	+	Pt_Chr0102173

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.12	24,167.60 Da	61.09	88.47	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	10	43	3.2E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	7	50	1.7E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	6	50	4.1E-6	-
ProSiteProfiles	PS50181	F-box domain profile.	7	54	9.312009	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G04230.1	FBD, F-box and Leucine Rich Repeat domains containing protein.
RefSeq	XP_047057322.1	uncharacterized protein LOC124663692 isoform X1 [Lolium rigidum]
TrEMBL	A0A3B6S978	F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH03.3573, AH05.688, BH03.3781, CH03.3284, CH03.4006 ... CH05.844, CH05.847
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0005700, gene-QOZ80_1BG0054350 ... gene-QOZ80_5BG0456890, gene-QOZ80_5BG0456900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0204110.1, HORVU.MOREX.r3.5HG0531250.1 ... HORVU.MOREX.r3.5HG0534580.1
Poaceae	Lolium multiflorum	10	gene-QYE76_013401, gene-QYE76_035003, gene-QYE76_035004 ... gene-QYE76_035052, gene-QYE76_055332, gene-QYE76_056143, gene-QYE76_060011, gene-QYE76_060151, gene-QYE76_060152, gene-QYE76_060937
Poaceae	Oryza coarctata	4	Oco02G006680, Oco02G006740, Oco10G000410, Oco10G010300
Poaceae	Oryza sativa	5	LOC_Os01g14270.1, LOC_Os05g01620.1, LOC_Os05g39660.1 ... LOC_Os09g32310.1, LOC_Os11g05020.1
Poaceae	Paspalum vaginatum	1	gene-BS78_09G001500
Poaceae	Puccinellia tenuiflora	15	Pt_Chr0102173, Pt_Chr0102191, Pt_Chr0102968, Pt_Chr0105483 ... Pt_Chr0106783, Pt_Chr0106850, Pt_Chr0107938, Pt_Chr0107941, Pt_Chr0107943, Pt_Chr0107948, Pt_Chr0107957, Pt_Chr0107959, Pt_Chr0504999, Pt_Chr0505208, Pt_Chr0506200
Poaceae	Thinopyrum elongatum	16	Tel1E01G111800, Tel2E01G973400, Tel3E01G038200 ... Tel3E01G579300, Tel5E01G036100, Tel5E01G806100, Tel5E01G809300, Tel5E01G843100, Tel5E01G848700, Tel5E01G849400, Tel5E01G850300, Tel5E01G850600, Tel7E01G301200, Tel7E01G400000, Tel7E01G400100, Tel7E01G713100
Poaceae	Triticum dicoccoides	15	gene_TRIDC1AG002220, gene_TRIDC2AG078630 ... gene_TRIDC2BG086810, gene_TRIDC2BG086850, gene_TRIDC3AG000990, gene_TRIDC4AG050000, gene_TRIDC4AG050250, gene_TRIDC4AG050300, gene_TRIDC4AG053680, gene_TRIDC5BG080820, gene_TRIDC5BG080850, gene_TRIDC6BG067590, gene_TRIDC7AG059020, gene_TRIDC7BG018780, gene_TRIDC7BG051850
Poaceae	Triticum aestivum	46	TraesCS1A02G022900.1, TraesCS1A02G051600.1 ... TraesCS1B02G029500.1, TraesCS1B02G068300.1, TraesCS1D02G053600.1, TraesCS2A02G172200.1, TraesCS2A02G585300.1, TraesCS2A02G585500.2, TraesCS2B02G597800.1, TraesCS2B02G598100.1, TraesCS2B02G598300.1, TraesCS2D02G174000.1, TraesCS2D02G601100.1, TraesCS3A02G022300.1, TraesCS3B02G023400.1, TraesCS3D02G024300.1, TraesCS4A02G330600.1, TraesCS4A02G331000.1, TraesCS4A02G331400.1, TraesCS4A02G332400.1, TraesCS4A02G332600.1, TraesCS4A02G350500.1, TraesCS4A02G352600.2, TraesCS4A02G359300.1, TraesCS5B02G545400.1, TraesCS5B02G545700.1, TraesCS5B02G546600.1, TraesCS5B02G553900.1, TraesCS5D02G521400.1, TraesCS5D02G540200.1, TraesCS5D02G540300.1, TraesCS5D02G541500.1, TraesCS5D02G541600.1, TraesCS5D02G541900.3, TraesCS5D02G542200.1, TraesCS6D02G105700.1, TraesCS7A02G148200.1, TraesCS7A02G217900.1.cds1, TraesCS7A02G221800.1, TraesCS7A02G425300.1, TraesCS7B02G052000.1, TraesCS7B02G324700.1, TraesCS7D02G150100.1, TraesCS7D02G220600.1, TraesCS7D02G416500.1, TraesCSU02G022100.1
Poaceae	Zoysia japonica	1	nbis-gene-18401