Basic Information
Locus ID:
Pt_Chr0102101
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 53224616 | 53228276 | - | Pt_Chr0102101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 44,028.03 Da | 57.23 | 58.32 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 319 | 359 | 9.99193E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 318 | 364 | 4.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 365 | 7.07E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 369 | 3.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 320 | 358 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 320 | 359 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 398 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020180930.1 | probable E3 ubiquitin-protein ligase LUL2 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453IH95 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology