Basic Information
Locus ID:
Pt_Chr0102097
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 53138202 | 53146252 | - | Pt_Chr0102097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 125,047.31 Da | 42.08 | 79.77 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 9.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 949 | 0.0037 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 828 | 1095 | 5.29E-37 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 662 | 8.24E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 691 | 3.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 541 | 7.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 736 | 979 | 1.1E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 980 | 1128 | 6.4E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 623 | 664 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 1.6E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 28.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 827 | 864 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 440 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 2.9E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 949 | 10.15287 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 958 | 12.413288 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 308 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_047090029.1 | protein TPR3 isoform X3 [Lolium rigidum] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5XWZ6 | TOPLESS OS=Triticum aestivum OX=4565 GN=TPL PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology