Basic Information
Locus ID:
Pt_Chr0102076
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 52135232 | 52143275 | - | Pt_Chr0102076 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 122,359.31 Da | 42.28 | 79.16 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 885 | 918 | 0.0036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 9.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 341 | 444 | 2.01E-7 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 418 | 923 | 1.49E-41 | IPR011047 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 859 | 1064 | 9.68E-16 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 948 | 1099 | 5.5E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 705 | 947 | 8.3E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 700 | 2.9E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 541 | 7.0E-29 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 796 | 833 | 49.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.7E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 970 | 1011 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 879 | 918 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 664 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 440 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 876 | 1.6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.886961 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 886 | 918 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 886 | 927 | 12.480124 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1066 | 1100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1076 | 1100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_047090029.1 | protein TPR3 isoform X3 [Lolium rigidum] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6HRH1 | TOPLESS OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology