Basic Information
Locus ID:
Pt_Chr0102063
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 51619310 | 51622743 | - | Pt_Chr0102063 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 55,993.01 Da | 29.39 | 103.52 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 282 | 382 | 2.17662E-28 | - |
| Pfam | PF00168 | C2 domain | 280 | 377 | 3.5E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 85 | 264 | 2.7E-16 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 278 | 403 | 1.36E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 264 | 432 | 8.6E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 281 | 379 | 1.5E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 263 | 382 | 21.528753 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 83 | 265 | 23.575354 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 344 | 352 | 3.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 322 | 335 | 3.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 297 | 309 | 3.7E-5 | IPR000008 |
| Coils | Coil | Coil | 403 | 423 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_003558336.1 | synaptotagmin-5 [Brachypodium distachyon] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3HIA6 | Synaptotagmin-5 OS=Brachypodium distachyon OX=15368 GN=100835665 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology