Basic Information
Locus ID:
Pt_Chr0101990
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 49597176 | 49599103 | - | Pt_Chr0101990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 41,597.38 Da | 46.22 | 93.24 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 245 | 355 | 0.00151191 | IPR002083 |
| Pfam | PF07707 | BTB And C-terminal Kelch | 63 | 161 | 2.6E-8 | IPR011705 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 246 | 359 | 5.01E-6 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 78 | 187 | 2.1E-9 | - |
| SMART | SM00875 | BACK_2 | 61 | 164 | 0.0074 | IPR011705 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61600.2 | POZ/BTB containin G-protein 1. POZ/BTB containing-protein AtPOB1 | 0 |
| RefSeq | XP_047083119.1 | BTB/POZ domain-containing protein At2g46260-like isoform X3 [Lolium rigidum] | 0 |
| Q9FPW6 | BTB/POZ domain-containing protein POB1 OS=Arabidopsis thaliana OX=3702 GN=POB1 PE=1 SV=2 | 0 | |
| TrEMBL | N1QRJ0 | Kelch-like protein 10 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0239050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_060465 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101990, Pt_Chr0106000, Pt_Chr0108220, Pt_Chr0601157 |
| Poaceae | Thinopyrum elongatum | 7 | Tel3E01G201600, Tel5E01G788100, Tel5E01G788500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG014670, gene_TRIDC3AG014680 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS3A02G118000.1, TraesCS3A02G118100.1 ... |