Basic Information
Locus ID:
Pt_Chr0101938
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cation efflux family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 48064788 | 48070301 | - | Pt_Chr0101938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 45,157.47 Da | 47.22 | 103.74 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01545 | Cation efflux family | 112 | 304 | 5.7E-25 | IPR002524 |
| Pfam | PF16916 | Dimerisation domain of Zinc Transporter | 309 | 384 | 2.4E-12 | IPR027470 |
| SUPERFAMILY | SSF160240 | Cation efflux protein cytoplasmic domain-like | 307 | 384 | 7.72E-16 | IPR036837 |
| SUPERFAMILY | SSF161111 | Cation efflux protein transmembrane domain-like | 103 | 305 | 1.24E-38 | IPR027469 |
| Gene3D | G3DSA:3.30.70.1350 | Cation efflux protein, cytoplasmic domain | 310 | 401 | 1.1E-16 | IPR036837 |
| Gene3D | G3DSA:1.20.1510.10 | Cation efflux protein transmembrane domain | 109 | 303 | 2.6E-37 | IPR027469 |
| TIGRFAM | TIGR01297 | CDF: cation diffusion facilitator family transporter | 109 | 384 | 1.0E-32 | IPR002524 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58060.1 | Cation efflux family protein. | 0 |
| RefSeq | XP_051182281.1 | metal tolerance protein 4 [Lolium perenne] | 0 |
| Q10PP8 | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP4 PE=2 SV=1 | 0 | |
| TrEMBL | I1H7Q9 | ZT_dimer domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100835572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology