Basic Information
Locus ID:
Pt_Chr0101572
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 36897265 | 36900854 | - | Pt_Chr0101572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 64,687.21 Da | 31.38 | 67.83 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16663 | RING-Ubox_PPIL2 | 38 | 110 | 1.94328E-43 | IPR026951 |
| CDD | cd01923 | cyclophilin_RING | 346 | 504 | 1.20809E-105 | - |
| Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 346 | 496 | 5.2E-48 | IPR002130 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 104 | 3.53E-16 | - |
| SUPERFAMILY | SSF50891 | Cyclophilin-like | 346 | 508 | 5.99E-63 | IPR029000 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | 2.8E-15 | IPR013083 |
| Gene3D | G3DSA:2.40.100.10 | - | 327 | 511 | 2.2E-70 | IPR029000 |
| SMART | SM00504 | Ubox_2 | 39 | 101 | 6.8E-12 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 35 | 108 | 29.484484 | IPR003613 |
| ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 350 | 497 | 32.061062 | IPR002130 |
| ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 381 | 398 | - | IPR020892 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 386 | 398 | 1.7E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 360 | 375 | 1.7E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 444 | 456 | 1.7E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 457 | 472 | 1.7E-23 | IPR002130 |
| PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 429 | 444 | 1.7E-23 | IPR002130 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 580 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67530.1 | plant U-box 49. | 0 |
| RefSeq | XP_051182770.1 | peptidyl-prolyl cis-trans isomerase CYP65 [Lolium perenne] | 0 |
| Q9FJX0 | Peptidyl-prolyl cis-trans isomerase CYP65 OS=Arabidopsis thaliana OX=3702 GN=CYP65 PE=2 SV=1 | 0 | |
| TrEMBL | I1H8H4 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100828731 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg39936 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027530 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13177, Sbi_jg52668 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9184 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010104 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34592, Sgl40007 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002529, gene:ENSEOMG00000027428 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026310, CQ.Regalona.r1.6BG0027740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205020 |
| Apiaceae | Apium graveolens | 1 | Ag5G00338 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716969, gene-LOC120108652 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1219.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G03693 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G67530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g014330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1433 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1434 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g09830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10081 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2567 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023789 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05471 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4625, CH01.5188, Contig181.37 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0237650, gene-QOZ80_3BG0290270 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_069990, gene-QYE76_070125 |
| Poaceae | Oryza coarctata | 1 | Oco06G005820 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10400.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G445000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101572 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G026770, Chr04G001880, Chr07G009390, Chr12G012590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G438900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006280, gene_TRIDC4BG044950 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G045200.1, TraesCS4B02G260100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb007780_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2581 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1848 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1859, evm.TU.LG14.31 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18040 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1783 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17372 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17205 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11981 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1085 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008166 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15442 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3300, nbisL1-mrna-3301 |
| Salicaceae | Populus euphratica | 2 | populus_peu19201, populus_peu37095 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622067 |
| Solanaceae | Solanum chilense | 1 | SOLCI005473200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012010 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2031 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24550.v3.1 |