Basic Information
Locus ID:
Pt_Chr0101560
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Probably involved in the biogenesis of the COX complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 36628457 | 36632152 | - | Pt_Chr0101560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 38,408.62 Da | 49.75 | 79.85 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06662 | SURF1 | 66 | 330 | 4.93918E-41 | IPR002994 |
| Pfam | PF02104 | SURF1 family | 60 | 325 | 1.1E-45 | IPR002994 |
| ProSiteProfiles | PS50895 | SURF1 family profile. | 53 | 339 | 34.678623 | IPR002994 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 43 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17910.1 | Surfeit locus 1 cytochrome c oxidase biogenesis protein. Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly. | 0 |
| RefSeq | XP_047084845.1 | surfeit locus protein 1-like [Lolium rigidum] | 0 |
| Q9SE51 | Surfeit locus protein 1 OS=Arabidopsis thaliana OX=3702 GN=SURF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6IVZ6 | SURF1-like protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4058 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006165 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16773, Sbi_jg16776, Sbi_jg61306 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008188 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24865, Sgl30012 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009064, gene:ENSEOMG00000028273 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010820, CQ.Regalona.r1.4BG0010990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30149060 |
| Apiaceae | Apium graveolens | 2 | Ag2G01729, Ag7G02029 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717776 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2477.V1.1, AsparagusV1_03.2606.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G00687 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G48510.1, AT3G17910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011732m.g.v1.0, Thhalv10021015m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046880.2N, BniB07g052290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2813 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2966 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g13760, gene.Cymno06g01720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0153s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g32280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.97 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023402, Pov_00033497 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37934, Lb3G16628 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.4629, Contig181.40 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0290380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398990.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070119 |
| Poaceae | Oryza coarctata | 2 | Oco05G005620, Oco06G005790 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G445400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101546, Pt_Chr0101560 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G026730, Chr04G001900, Chr07G009360, Chr12G012630 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G439300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006230, gene_TRIDC4BG045000 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G044900.2, TraesCS4B02G260400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb007820_P003, Zm00001eb099110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4155 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4207 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1912 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25780 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.688 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28674 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1677 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.442 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000355 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14461 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1650 |
| Salicaceae | Populus euphratica | 1 | populus_peu29694 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633190 |
| Solanaceae | Solanum chilense | 1 | SOLCI000573000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012562 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13927 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04040.v3.1 |