Basic Information
Locus ID:
Pt_Chr0101468
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 33391478 | 33395011 | - | Pt_Chr0101468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 41,921.88 Da | 39.00 | 75.66 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02663 | Peptidase_C19G | 24 | 360 | 0.0 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 23 | 359 | 1.2E-61 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 21 | 360 | 1.61E-91 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 3 | 361 | 5.1E-109 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 23 | 362 | 61.146511 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 293 | 311 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 24 | 39 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39910.1 | ubiquitin-specific protease 3. Encodes a nuclear ubiquitin-specific protease. | 0 |
| RefSeq | XP_051183267.1 | ubiquitin carboxyl-terminal hydrolase 3-like [Lolium perenne] | 0 |
| O24454 | Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana OX=3702 GN=UBP3 PE=1 SV=1 | 0 | |
| TrEMBL | I1H8R3 | USP domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100846646 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17032, jg20077, jg28482 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16472, gene_21835 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009779, Ah027337 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g135050, BVRB_9g215030 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12101, Sbi_jg12719, Sbi_jg47036, Sbi_jg53187 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21315, Seu_jg8706 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009661, GOSA_00010306 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33836, Sgl39199, Sgl61576 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001904, gene:ENSEOMG00000002532 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0024320, CQ.Regalona.r1.6BG0025660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30258910 |
| Apiaceae | Apium graveolens | 1 | Ag9G00322 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G007180, COCNU_03G007020, COCNU_13G003040 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103701761, gene-LOC103707909, gene-LOC103710532 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1813.V1.1, AsparagusV1_03.232.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri4G14470, Ftri7G07851, Ftri8G17511 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G22310.2, AT4G39910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000204m.g.v1.0, Thhalv10025506m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g01360.v2.2, Sp7g35980.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g014830.2N, BniB05g000150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1735 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1796 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno05g10580, gene.Cymno09g04690, gene.Cymno11g07510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0433s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g27800 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10154, nbisL1-mrna-10620, nbisL1-mrna-7218 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.651 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002102, Pov_00039806 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17580, Lb5G27867 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4700, AH07.2302, AH09.1185, BH06.2097, BH09.1291 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0134880, gene-QOZ80_2BG0190500 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0172520.1, HORVU.MOREX.r3.4HG0406900.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_023142, gene-QYE76_044376, gene-QYE76_070225 |
| Poaceae | Oryza coarctata | 6 | Oco03G013320, Oco04G013070, Oco05G005020, Oco06G005190 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36400.1, LOC_Os03g09080.1, LOC_Os04g37950.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G452500, gene-BS78_04G172100 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0101431, Pt_Chr0101468, Pt_Chr0205405, Pt_Chr0302527 ... |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G026030, Chr04G002350, Chr07G008890, Chr09G013610 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G561800, Tel4E01G510100, Tel6E01G393600 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG046730, gene_TRIDC2BG049430 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G340100.1, TraesCS4A02G406600.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb006870_P001, Zm00001eb081190_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18741, nbis-gene-37704, nbis-gene-4237 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g16527, Zma_g19808, Zma_g21380, Zma_g4254 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.1920, evm.TU.LG05.640, evm.TU.LG08.933 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g11810, gene.Posoc01g23040, gene.Posoc04g15580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.49896.1, evm.TU.Scaffold_6_RagTag.1662 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17502 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11591 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12101 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1014 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007298 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15124 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4406 |
| Salicaceae | Populus euphratica | 2 | populus_peu13765, populus_peu22924 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598790, gene-LOC132613679 |
| Solanaceae | Solanum chilense | 2 | SOLCI001225700, SOLCI003405000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008305, gene-LOC107018090 |
| Tamaricaceae | Reaumuria soongarica | 5 | STRG.20544_chr08_-, gene_16295, gene_2877, gene_2878 ... |
| Tamaricaceae | Tamarix chinensis | 3 | TC09G0028, TC10G0046, TC12G0676 |
| Zosteraceae | Zostera marina | 3 | Zosma01g07400.v3.1, Zosma03g34080.v3.1, Zosma06g04420.v3.1 |