Basic Information
Locus ID:
Pt_Chr0101359
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 30025784 | 30036665 | + | Pt_Chr0101359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 82,593.93 Da | 35.86 | 80.46 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 440 | 727 | 1.06447E-54 | - |
| Pfam | PF08156 | NOP5NT (NUC127) domain | 83 | 138 | 2.5E-7 | IPR012974 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 507 | 1.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 608 | 638 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 698 | 727 | 0.08 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 553 | 0.0063 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 440 | 727 | 2.0E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 416 | 729 | 2.8E-80 | IPR015943 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 687 | 728 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 680 | 9.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 466 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 514 | 553 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 600 | 638 | 9.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 597 | 6.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 476 | 508 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 521 | 562 | 10.909469 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 607 | 647 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 606 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 476 | 508 | 14.585471 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33340.1 | MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_051212490.1 | pre-mRNA-processing factor 19-like [Lolium perenne] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9WDX3 | Pre-mRNA-processing factor 19 OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101359, Pt_Chr0107667, Pt_Chr0501995, Pt_Chr0505332 |