Basic Information
Locus ID:
Pt_Chr0100851
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 17130985 | 17137855 | + | Pt_Chr0100851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 100,576.97 Da | 46.28 | 86.54 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 477 | 506 | 1.32964E-4 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 302 | 360 | 4.8E-10 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 585 | 846 | 3.1E-34 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 565 | 853 | 4.45E-59 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 413 | 517 | 4.4E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 557 | 659 | 8.2E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 660 | 872 | 2.6E-36 | - |
| SMART | SM00220 | serkin_6 | 584 | 853 | 1.0E-14 | IPR000719 |
| SMART | SM00179 | egfca_6 | 477 | 517 | 1.7E-4 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 584 | 853 | 29.855967 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 590 | 613 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 704 | 716 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_020154026.1 | wall-associated receptor kinase 3 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453JD24 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0100851 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G035250.1 |