Basic Information
Locus ID:
Pt_Chr0100813
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 16186097 | 16203930 | - | Pt_Chr0100813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 65,436.68 Da | 38.34 | 86.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 264 | 371 | 2.04658E-18 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 403 | 513 | 1.54159E-46 | - |
| CDD | cd00121 | MATH | 2 | 87 | 8.64737E-10 | IPR002083 |
| Pfam | PF00917 | MATH domain | 280 | 372 | 0.0048 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 110 | 217 | 4.9E-17 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 406 | 515 | 6.8E-27 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1 | 98 | 8.34E-13 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 391 | 514 | 7.65E-34 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 107 | 217 | 3.14E-22 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 261 | 388 | 3.92E-24 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 106 | 179 | 8.3E-21 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 516 | 580 | 2.2E-17 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 188 | 259 | 6.5E-14 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 260 | 378 | 1.7E-18 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1 | 94 | 3.9E-10 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 390 | 509 | 7.9E-38 | IPR011333 |
| SMART | SM00225 | BTB_4 | 414 | 516 | 4.9E-24 | IPR000210 |
| SMART | SM00225 | BTB_4 | 118 | 220 | 4.5E-12 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1 | 89 | 9.651752 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 118 | 178 | 15.555909 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 261 | 395 | 16.785643 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 414 | 481 | 17.768883 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_037431840.1 | BTB/POZ and MATH domain-containing protein 2-like [Triticum dicoccoides] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9ZQZ7 | BTB domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology