Basic Information
Locus ID:
Pt_Chr0100721
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 13976271 | 13977356 | + | Pt_Chr0100721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 40,018.45 Da | 36.88 | 86.90 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 178 | 288 | 9.56195E-49 | - |
| CDD | cd00121 | MATH | 29 | 150 | 2.1753E-24 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 181 | 290 | 1.6E-27 | IPR000210 |
| Pfam | PF00917 | MATH domain | 45 | 148 | 8.1E-5 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 166 | 289 | 3.73E-34 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 163 | 2.94E-29 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 157 | 1.4E-23 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 291 | 358 | 1.0E-17 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 164 | 285 | 2.8E-38 | IPR011333 |
| SMART | SM00225 | BTB_4 | 189 | 291 | 1.6E-23 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 26 | 152 | 17.169186 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 189 | 256 | 17.768883 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_037431840.1 | BTB/POZ and MATH domain-containing protein 2-like [Triticum dicoccoides] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QY81 | Speckle-type POZ protein-like protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology