Basic Information
Locus ID:
Pt_Chr0100708
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 13760867 | 13762951 | + | Pt_Chr0100708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 74,177.00 Da | 40.88 | 73.76 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 214 | 386 | 1.89361E-53 | - |
| Pfam | PF14624 | VWA / Hh protein intein-like | 563 | 666 | 1.2E-10 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 215 | 396 | 5.6E-22 | IPR002035 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 117 | 3.32E-8 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 210 | 399 | 3.53E-32 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 54 | 3.15E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 118 | 3.8E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 215 | 400 | 8.0E-45 | IPR036465 |
| SMART | SM00184 | ring_2 | 72 | 109 | 1.7E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 4 | 40 | 0.052 | IPR001841 |
| SMART | SM00327 | VWA_4 | 213 | 395 | 2.0E-25 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 110 | 8.830534 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 4 | 41 | 10.114045 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 215 | 406 | 16.434151 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 668 | 694 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 694 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051230204.1 | E3 ubiquitin-protein ligase WAV3-like [Lolium perenne] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6IXA6 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071424 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0100096, Pt_Chr0100209, Pt_Chr0100707, Pt_Chr0100708 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G624400 |