Basic Information
Locus ID:
Pt_Chr0100663
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
BEST Arabidopsis thaliana protein match is Protein of
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 12536677 | 12542427 | + | Pt_Chr0100663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 43,652.46 Da | 43.17 | 82.04 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05056 | Protein of unknown function (DUF674) | 316 | 379 | 9.5E-8 | IPR007750 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 5 | 41 | 5.1E-12 | IPR007750 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 72 | 152 | 6.3E-6 | IPR007750 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 167 | 278 | 4.4E-10 | IPR007750 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01120.1 | Protein of unknown function (DUF674). | 0 |
| RefSeq | XP_051230193.1 | uncharacterized protein LOC127348140 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6IYV5 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0296450 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0075250.1, HORVU.MOREX.r3.4HG0413000.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_062937, gene-QYE76_071335, gene-QYE76_071336 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G502800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100642, Pt_Chr0100660, Pt_Chr0100663 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G038660 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G446600, Tel4E01G571500, Tel4E01G571600 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG058660, gene_TRIDC4BG058770 ... |
| Poaceae | Triticum aestivum | 19 | TraesCS1A02G273800.1, TraesCS1B02G283500.1 ... |