Basic Information
Locus ID:
Pt_Chr0100623
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 11517443 | 11521649 | - | Pt_Chr0100623 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 55,206.15 Da | 43.93 | 70.12 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 451 | 487 | 1.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 357 | 7.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 362 | 402 | 0.0029 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 241 | 298 | 2.2E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 195 | 488 | 2.29E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 184 | 492 | 2.7E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 277 | 314 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 274 | 0.079 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 231 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 487 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 357 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 402 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 460.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 325 | 357 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 455 | 488 | 11.73468 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 325 | 357 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 488 | 14.184453 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_044377040.1 | protein FIZZY-RELATED 2-like [Triticum aestivum] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6JRG9 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology