Basic Information
Locus ID:
Pt_Chr0100491
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 9030526 | 9032718 | + | Pt_Chr0100491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 81,357.68 Da | 41.08 | 86.71 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14733 | BACK | 680 | 707 | 0.00646644 | - |
| CDD | cd00121 | MATH | 398 | 536 | 1.41821E-13 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 182 | 297 | 1.5E-23 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 564 | 676 | 1.2E-19 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 396 | 536 | 1.37E-14 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 555 | 677 | 1.69E-20 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 173 | 298 | 2.55E-26 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 14 | 157 | 2.62E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 396 | 537 | 2.6E-13 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 173 | 297 | 1.5E-28 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 540 | 708 | 5.0E-35 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 298 | 375 | 8.7E-13 | - |
| SMART | SM00225 | BTB_4 | 574 | 678 | 2.3E-16 | IPR000210 |
| SMART | SM00225 | BTB_4 | 191 | 298 | 5.9E-25 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 397 | 534 | 11.364908 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 574 | 638 | 14.397717 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 191 | 262 | 16.672737 | IPR000210 |
| Coils | Coil | Coil | 336 | 356 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047044009.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6TNA2 | Speckle-type POZ protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0712650 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219660.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_000351, gene-QYE76_018036, gene-QYE76_020460 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0100491, Pt_Chr0106602, Pt_Chr0206622, Pt_Chr0206755 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G840100 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG009110, gene_TRIDC3AG071980 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G009700.1.cds1, TraesCS3A02G076600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb418740_P001 |