Basic Information
Locus ID:
Pt_Chr0100441
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 8313011 | 8315909 | - | Pt_Chr0100441 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 72,513.70 Da | 51.60 | 105.84 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 397 | 419 | 0.07 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 422 | 445 | 0.29 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 528 | 549 | 0.26 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 79 | 1.44E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 293 | 1.84E-13 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 334 | 596 | 2.35E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 445 | 1.7E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 448 | 630 | 4.2E-19 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 500 | 525 | 8.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 345 | 370 | 0.0061 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 526 | 551 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 423 | 447 | 99.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 473 | 497 | 710.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 397 | 422 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 129 | 154 | 110.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17020.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_047089367.1 | F-box/LRR-repeat protein 10-like [Lolium rigidum] | 0 |
| Q9SDA8 | F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana OX=3702 GN=FBL10 PE=2 SV=1 | 0 | |
| TrEMBL | I1HA10 | F-box domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100845935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24668, jg854 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21929 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009612 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g213390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12290, Sbi_jg47273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21541 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018842 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55519, Sgl60738 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017151, gene:ENSEOMG00000037998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002410, CQ.Regalona.r1.9AG0022260 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30151010, pistato.v30151060, pistato.v30277580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01348, Ag6G02381 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G006520, scaffold023760G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696458, gene-LOC103711993 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.504.V1.1, AsparagusV1_04.2356.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G09473, Ftri15G13747 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55590.1, AT2G17020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011328m.g.v1.0, Thhalv10022585m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41210.v2.2, Sp3g30310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g026470.2N, BniB04g053880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1582, Ceq07G1777 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1746, Cgl07G1924 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g05150, gene.Cymno02g10660 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g09020, gene.Thate08g04950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2134, evm.TU.LG08.360 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001726, Pov_00038034 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G17288, Lb3G17289, Lb3G17293 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.5222, AH08.1958, BH01.4988, BH08.2058, CH01.5592 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232800, gene-QOZ80_3BG0295160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0409150.1, HORVU.MOREX.r3.7HG0678220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029853, gene-QYE76_071078 |
| Poaceae | Oryza coarctata | 4 | Oco05G002180, Oco06G002140, Oco15G011660, Oco16G010910 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g04270.1, LOC_Os08g39060.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G490300, gene-BS78_07G179000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100359, Pt_Chr0100441, Pt_Chr0404027 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G037900, Chr01G038020, Chr07G006430, Chr12G001520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G543400, Tel7E01G426900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG055520, gene_TRIDC5AG071590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4B02G331300.2, TraesCS4D02G328200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb199550_P002, Zm00001eb402660_P003 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15229, nbis-gene-17361, nbis-gene-3000 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g2131, Zma_g24314, Zma_g29124, Zma_g367 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1779, evm.TU.LG09.154 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g03480, gene.Posoc03g09780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2353, evm.TU.Scaffold_1_RagTag.2354 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5213 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7908 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3217 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.39 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4596 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22490 |
| Salicaceae | Populus euphratica | 3 | populus_peu08659, populus_peu17079, populus_peu36693 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599361, gene-LOC132618602 |
| Solanaceae | Solanum chilense | 2 | SOLCI000015500, SOLCI004292800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007755, gene-LOC107024198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11746_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0178 |
| Zosteraceae | Zostera marina | 2 | Zosma03g14410.v3.1, Zosma06g26760.v3.1 |