Basic Information
Locus ID:
Pt_Chr0100429
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 8127748 | 8131185 | + | Pt_Chr0100429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 26,445.82 Da | 41.33 | 65.71 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 20 | 238 | 1.8E-79 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 121 | 228 | 3.29E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 124 | 241 | 3.1E-39 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 127 | 229 | 23.018164 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 87 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_047080923.1 | auxin-responsive protein IAA21-like [Lolium rigidum] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RHP9 | Auxin-responsive protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology