Basic Information
Locus ID:
Pt_Chr0100375
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 6916464 | 6918917 | - | Pt_Chr0100375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 74,768.38 Da | 41.81 | 80.15 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 274 | 309 | 6.57649E-5 | - |
| CDD | cd00325 | chitinase_GH19 | 28 | 234 | 2.09759E-82 | - |
| Pfam | PF00069 | Protein kinase domain | 360 | 628 | 2.4E-48 | IPR000719 |
| Pfam | PF00182 | Chitinase class I | 27 | 234 | 8.5E-75 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 24 | 238 | 2.17E-75 | IPR023346 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 651 | 1.27E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 344 | 435 | 3.2E-32 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 99 | 142 | 3.8E-75 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 32 | 238 | 3.8E-75 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 436 | 651 | 1.4E-58 | - |
| SMART | SM00220 | serkin_6 | 359 | 632 | 8.7E-41 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 359 | 639 | 37.248051 | IPR000719 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 146 | 156 | - | IPR000726 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 365 | 388 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 480 | 492 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_044451657.1 | L-type lectin-domain containing receptor kinase IX.1-like [Triticum aestivum] | 0 |
| Q9LXA5 | L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZUG3 | chitinase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0100375 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG056370, gene_TRIDC1BG064870 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G383900.1, TraesCS1B02G410600.1 ... |