Basic Information
Locus ID:
Pt_Chr0100229
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
ABCC5
Description:
ABC transporter that may affect phytic acid transport and compartmentalization. May function directly or indirectly in removing phytic acid from the cytosol or in vesicle trafficking. Required for phytic acid accumulation in developing seeds. Phytic acid is the primary storage form of phosphorus in cereal grains and other plant seeds
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 4203525 | 4212887 | - | Pt_Chr0100229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 165,262.95 Da | 44.88 | 104.33 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 621 | 820 | 2.99785E-102 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1257 | 1477 | 4.80932E-125 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 940 | 1234 | 1.66992E-96 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 595 | 1.26454E-104 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 575 | 9.5E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 641 | 773 | 1.6E-17 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 942 | 1182 | 2.7E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1276 | 1424 | 5.5E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 617 | 842 | 5.94E-53 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1251 | 1491 | 3.72E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 296 | 605 | 5.36E-36 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 939 | 1239 | 6.67E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 615 | 849 | 2.4E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 279 | 604 | 3.7E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 901 | 1240 | 2.4E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1242 | 1495 | 9.3E-82 | IPR027417 |
| SMART | SM00382 | AAA_5 | 648 | 821 | 7.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1285 | 1470 | 3.9E-15 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 587 | 33.782173 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 621 | 844 | 22.315702 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1259 | 1493 | 18.04068 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 942 | 1212 | 35.45731 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 746 | 760 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 883 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 882 | 916 | - | - |
| Coils | Coil | Coil | 498 | 518 | - | - |
| Coils | Coil | Coil | 894 | 914 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_051182793.1 | ABC transporter C family member 13 [Lolium perenne] | 0 |
| A2XCD4 | ABC transporter C family member 13 OS=Oryza sativa subsp. indica OX=39946 GN=ABCC13 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6IYP9 | ABC transporter C family member 5 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology