Basic Information
Locus ID:
Pt_Chr0100198
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 3665058 | 3668156 | + | Pt_Chr0100198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 100,781.60 Da | 31.28 | 100.75 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 65 | 6.5E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 437 | 497 | 3.6E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 621 | 907 | 1.7E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 616 | 910 | 4.78E-70 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 171 | 498 | 1.1E-63 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 54 | 214 | 2.67E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 215 | 533 | 1.2E-90 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 712 | 933 | 1.3E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 609 | 711 | 3.0E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 214 | 9.1E-36 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 364 | 388 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 436 | 459 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 389 | 412 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 460 | 484 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 268 | 292 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 220 | 244 | 82.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 619 | 910 | 1.3E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 619 | 937 | 36.739227 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 758 | 770 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 625 | 649 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_051182819.1 | MDIS1-interacting receptor like kinase 1-like [Lolium perenne] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | F2D364 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology