Basic Information
Locus ID:
Pt_Chr0100096
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 2015766 | 2016860 | + | Pt_Chr0100096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 40,074.76 Da | 35.77 | 67.00 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 12 | 47 | 0.0028321 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 143 | 7.07E-8 | - |
| SMART | SM00184 | ring_2 | 12 | 48 | 0.24 | IPR001841 |
| SMART | SM00184 | ring_2 | 97 | 132 | 0.0019 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 133 | 8.623992 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 46 | 9.169853 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_051230204.1 | E3 ubiquitin-protein ligase WAV3-like [Lolium perenne] | 0 |
| TrEMBL | A0A3B6IXA6 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_071424 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0100096, Pt_Chr0100209, Pt_Chr0100707, Pt_Chr0100708 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G624400 |