Basic Information
Locus ID:
Pt_Chr0100084
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1730092 | 1731396 | + | Pt_Chr0100084 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 46,365.56 Da | 42.85 | 69.49 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 335 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 167 | 0.0067 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 133 | 430 | 4.09E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 122 | 268 | 8.8E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 269 | 434 | 1.2E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 211 | 253 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 296 | 90.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 21 | 45 | 0.0074 | IPR000571 |
| SMART | SM00320 | WD40_4 | 299 | 336 | 0.005 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 432 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 350 | 392 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 129 | 168 | 0.0064 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 136 | 177 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 136 | 167 | 9.493783 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 20 | 46 | 11.657132 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 306 | 335 | 9.439068 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 283 | 297 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 323 | 337 | 3.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 155 | 169 | 3.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 121 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047083579.1 | zinc finger CCCH domain-containing protein 48-like [Lolium rigidum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8I6XI53 | C3H1-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology