Basic Information
Locus ID:
Pt_Chr0100005
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 147509 | 148744 | + | Pt_Chr0100005 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 45,793.81 Da | 55.49 | 90.12 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 60 | 2.35E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 59 | 3.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047060971.1 | uncharacterized protein LOC124667762 [Lolium rigidum] | 0 |
| TrEMBL | M8BRY2 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 9 | AH05.2918, BH05.1292, BH05.2981, BH08.655, BH08.658 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_8AG0621050, gene-QOZ80_8AG0621070 ... |
| Poaceae | Hordeum vulgare | 12 | HORVU.MOREX.r3.1HG0081260.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 34 | gene-QYE76_007113, gene-QYE76_013869, gene-QYE76_016171 ... |
| Poaceae | Oryza coarctata | 1 | Oco23G005750 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g10340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G079400 |
| Poaceae | Puccinellia tenuiflora | 20 | Pt_Chr0100005, Pt_Chr0100006, Pt_Chr0400333, Pt_Chr0401546 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr02G016430 |
| Poaceae | Thinopyrum elongatum | 12 | Tel1E01G210900, Tel1E01G537800, Tel1E01G537900 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG051830, gene_TRIDC1AG052480 ... |
| Poaceae | Triticum aestivum | 38 | TraesCS1A02G113500.1, TraesCS1A02G351100.1.cds1 ... |