Basic Information
Locus ID:
Oco24G010220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 15442420 | 15447710 | - | Oco24G010220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 73,875.88 Da | 55.69 | 89.70 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 122 | 2.35836E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 29 | 113 | 2.4E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 469 | 6.1E-91 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 113 | 6.91E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 132 | 2.5E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 493 | 90.539215 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 96 | 11.088597 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 643 | - | - |
| Coils | Coil | Coil | 632 | 659 | - | - |
| Coils | Coil | Coil | 543 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_052137710.1 | histone-lysine N-methyltransferase ATXR7-like [Oryza glaberrima] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1BNI4 | NPH3 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology