Basic Information
Locus ID:
Oco24G010200
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Amino acid permease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 15427563 | 15429793 | - | Oco24G010200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 45,437.08 Da | 30.77 | 107.81 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00324 | Amino acid permease | 123 | 194 | 8.6E-7 | IPR004841 |
| Pfam | PF13906 | C-terminus of AA_permease | 352 | 399 | 1.4E-16 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 1 | 195 | 1.3E-29 | - |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 204 | 407 | 1.1E-10 | - |
| PIRSF | PIRSF006060 | AA_transporter | 209 | 412 | 3.8E-6 | - |
| PIRSF | PIRSF006060 | AA_transporter | 120 | 195 | 1.9E-13 | - |
| PIRSF | PIRSF006060 | AA_transporter | 1 | 143 | 9.3E-7 | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.1 | amino acid transporter 1. Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. | 0 |
| RefSeq | XP_040385410.1 | cationic amino acid transporter 1-like isoform X4 [Oryza brachyantha] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | J3NEX7 | AA_permease_C domain-containing protein OS=Oryza brachyantha OX=4533 GN=102699359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology