Basic Information
Locus ID:
Oco24G010140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Cleavage inducing molecular chaperone
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 15360165 | 15367571 | - | Oco24G010140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 61,568.57 Da | 53.56 | 78.90 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 288 | 344 | 2.09613E-19 | IPR001623 |
| Pfam | PF00226 | DnaJ domain | 288 | 352 | 2.1E-19 | IPR001623 |
| Pfam | PF14901 | Cleavage inducing molecular chaperone | 382 | 475 | 7.0E-37 | IPR032843 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 216 | 351 | 1.31E-19 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 274 | 378 | 1.4E-21 | IPR036869 |
| SMART | SM00271 | dnaj_3 | 287 | 347 | 3.0E-20 | IPR001623 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 288 | 355 | 17.116703 | IPR001623 |
| ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 332 | 351 | - | IPR018253 |
| PRINTS | PR00625 | DnaJ domain signature | 255 | 273 | 7.9E-8 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 310 | 325 | 7.9E-8 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 327 | 347 | 7.9E-8 | IPR001623 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79030.1 | Chaperone DnaJ-domain superfamily protein. | 0 |
| RefSeq | XP_006664189.1 | uncharacterized protein LOC102721410 [Oryza brachyantha] | 0 |
| Q182E7 | Chaperone protein DnaJ OS=Clostridioides difficile (strain 630) OX=272563 GN=dnaJ PE=3 SV=1 | 0 | |
| TrEMBL | J3NEX1 | J domain-containing protein OS=Oryza brachyantha OX=4533 GN=102721410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20584, jg21674 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7668 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007416 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18966, Sbi_jg37421 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5261 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl22446, Sgl27670 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000008326, gene:ENSEOMG00000030961 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0016060, CQ.Regalona.r1.4BG0016230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164170 |
| Apiaceae | Apium graveolens | 3 | Ag10G01005, Ag10G02921, Ag4G01939 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712133 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G10624, Ftri2G11896 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G16680.1, AT1G79030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007268m.g.v1.0, Thhalv10018356m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14820.v2.2, Sp5g34080.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g042060.2N, BniB06g050600.2N, BniB06g067490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1603 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1768 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g02950, gene.Cymno13g02620 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1036 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038045 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17679 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4038, BH05.4142, CH05.4364 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0397840, gene-QOZ80_5BG0446400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0429600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000941 |
| Poaceae | Oryza coarctata | 2 | Oco23G010290, Oco24G010140 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G145100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704419 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018980, Chr06G019830, Chr19G007720, Chr27G008980 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G104600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG006910, gene_TRIDC5BG008270 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G045300.1, TraesCS5B02G049500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb031650_P001, Zm00001eb136040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47527 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25327, Zma_g26119 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2195, evm.TU.LG14.1346 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07260, gene.Posoc10g05350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.78 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20776 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7609 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.59 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017551 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6683 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21619 |
| Salicaceae | Populus euphratica | 3 | populus_peu00269, populus_peu17331, populus_peu37319 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620455 |
| Solanaceae | Solanum chilense | 1 | SOLCI004293300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026191 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27202_chr04_+, STRG.28610_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2058, TC02G3671 |
| Zosteraceae | Zostera marina | 2 | Zosma05g19540.v3.1, Zosma06g04950.v3.1 |