Basic Information
Locus ID:
Oco24G009580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 14647000 | 14652682 | - | Oco24G009580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 27,845.28 Da | 44.21 | 72.89 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 10 | 251 | 8.4E-87 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 144 | 241 | 2.94E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 140 | 254 | 3.4E-45 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 145 | 242 | 25.110106 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 68 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_052138754.1 | auxin-responsive protein IAA30 [Oryza glaberrima] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BNB1 | Auxin-responsive protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023635 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology