Basic Information
Locus ID:
Oco24G009420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG24 | 14463416 | 14469321 | + | Oco24G009420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 55,124.87 Da | 57.97 | 71.61 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 121 | 173 | 1.96685E-29 | - |
| Pfam | PF02809 | Ubiquitin interaction motif | 70 | 83 | 0.11 | IPR003903 |
| Pfam | PF02809 | Ubiquitin interaction motif | 40 | 55 | 0.13 | IPR003903 |
| Pfam | PF00412 | LIM domain | 121 | 175 | 3.5E-12 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 270 | 480 | 3.2E-97 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 115 | 146 | 3.36E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 147 | 202 | 6.81E-12 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 113 | 179 | 4.5E-17 | - |
| SMART | SM00726 | uim | 40 | 59 | 0.15 | IPR003903 |
| SMART | SM00132 | lim_4 | 120 | 172 | 1.9E-16 | IPR001781 |
| SMART | SM00726 | uim | 70 | 89 | 0.59 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 119 | 179 | 12.9691 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 40 | 59 | 9.191708 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 121 | 155 | - | IPR001781 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_015618088.1 | protein DA1-related 1 [Oryza sativa Japonica Group] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | Q2QMP4 | LIM domain-containing protein, putative, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g40490 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology